Cryptmeria japonica Chloroplast DNA SSR marker information
Locus Primer sequences (5'-3') Location Repeat motif Fluor Size @range (bp) No. of alleles Diversity index (H)
Mononucleotide motif
CjCP1m_001 F:M13-CCTATTTGCTCGACGGACA psbJ-clpP spacer (A)12 FAM 119-121 3 0.166
R:ACCGGCAATAATACCGACTC
CjCP1m_002 F:M13-GATCTGTCCAACGAATTCACG accD-rbcL spacer (T)17 HEX 156-159 4 0.526
R:TGAATCGGCTTTGTCCGG
CjCP1m_003 F:M13-TGAAAGATTTCATAGGTTCCACG trnV-ndhC spacer (T)16 NED 211-214 4 0.344
R:GCGTTACTGCTGAGTGTG
CjCP1m_004 F:M13-ATCTTCCGAACTTGTGATTCG chlL-trnH spacer (T)11 FAM 172-173 2 0.391
R:TCCTCCATTTACTCAGGAGAG
CjCP1m_005 F:M13-ACAAAGTGGTTATAGCTCGTTGA matK-chlB spacer (A)11 HEX 199-201 3 0.560
R:ACGACATGATTAGTTCTGTGG
CjCP1m_006 F:M13-AGTAAGTCTTTTAATTCGACCGG rps15-rpl32 spacer (A)12 NED 294-295 2 0.369
R:TCTTGCTGGTATGGTCGC
CjCP1m_007 F:M13-TGCGTTTTTTTGGTACAGCCA rpl32-ndhF spacer (T)12 FAM 229-232 4 0.558
R:TCGTGGATCCCCTATTGC
Dinucleotide motif
CjCP2m_001 F:M13-GGATTGAACAAATTTTGACTCCCA ycf4-psaI spacer (AT)9 FAM 263-269 4 0.409
R:ACATTTGAATAGAGAGATTCGT
CjCP2m_002 F:M13-TTGTAGCTCTACGTGGCA rps11-rpl36 spacer (AT)8 HEX 319-321 2 0.085
R:CCTAATTCGTAGACGGAAACG
CjCP2m_003 F:M13-CCCTTCCCAAACTGTACAAGC rpl2 intron (AT)10 A(AT)5 NED 179-183 3 0.304
R:AGGACATAAGGAATTTAAAGTATCCCC
CjCP2m_004 F:M13-TTAGGGCTCCGGCGTATA rps12-5'-rpl20 spacer (TA)6 FAM 150-154 3 0.201
R:AGTAGGCAAGGGATTGGACC
CjCP2m_005 F:M13-TGATCCATCTGACTCACT accD-rbcL spacer (TA)8 HEX 168-170 2 0.085
R:ATCAGAAGCGGAATTTGA
CjCP2m_006 F:M13-CCATTCGATCCCTATCCGG psbZ-trnS spacer (AT)10 FAM 249-257 5 0.345
R:GAGCCATCAACCACTCGG
CjCP2m_007 F:M13-TGTACCCCGGTGTGGAAC atpI-atpH spacer (TA)5 CTA(AT)6 HEX 295-297 3 0.379
R:TGAAACAACTAAACTCCGACG
CjCP2m_008 F:M13-AGATCGTGAGGGTTCGAGT trnL-trnF spacer (TA)23 NED 307-337 13 0.895
R:GCATCATACTAGCACAGTAACC
CjCP2m_009 F:M13-ATCCCGAAGGATTCGGAG trnV-rps12-3' spacer (AT)10 FAM 116-122 3 0.334
R:TGGAAACTTGATTGGGCAG
CjCP2m_010 F:M13-AGCTCCTCTGACTTTGGC ccsA-petA spacer (AT)9 HEX 252-256 3 0.273
R:TCCCTAGTTATGCGCGAC