Cryptmeria japonica Chloroplast DNA Intra-specific_variation(SNPs_and_Indels)


SNPs
Mutation type Region Draft Yaku Wogon
bp/nt bp/nt bp/nt
SNP rps11-rpl36 spacer 10,876 10,876 10,876
G G T
SNP rpl23 coding region 17,433 17,429 17,431
C A A
SNP trnP-trnW spacer 21,020 21,017 21,018
A G A
SNP psbJ-clpP spacer 23,914 23,912 23,912
G T G
SNP accD-rbcL spacer 28,328 28,350 28,349
C G G
SNP ndhJ-chlN spacer 37,074 37,095 37,094
G C C
SNP chlB cording region 47,179 47,200 47,219
T G G
SNP rps2 cording region 76,758 76,778 76,797
C A A
SNP atpI-atpH spacer 78,483 78,503 78,522
T C C
SNP atpF intron 79,981 80,001 80,022
G A A
SNP ycf68-rps12 spacer 105,819 105,814 105,857
T G T
SNP ycf68-rps12 spacer 105,820 105,815 105,858
C A C
SNP ycf2-ycf1 spacer 121,669 121,634 121,743
A A G
SNP trnP coding region 129,690 129,647 129,704
G A A
SNP ccsA-petA spacer 131,585 131,542 131,579
T T G




Indels
1 2 3 4 5
Draft SQ position 25,582 43,925 115,841 128,720 130,019
Region clpP-aacD spacer matK ycf2 ycf1 trnL-UAG-ccsA spacer
Draft SQ - - - - -
Yaku-sugi 24 bp insertion - 33 bp deletion - -
Wogon-sugi 24 bp insertion 19 bp insertion 33 bp insertion 66 bp deletion 19 bp deletion