Cryptmeria japonica Chloroplast DNA Intra-specific_variation(SNPs_and_Indels)
SNPs | ||||
Mutation type | Region | Draft | Yaku | Wogon |
bp/nt | bp/nt | bp/nt | ||
SNP | rps11-rpl36 spacer | 10,876 | 10,876 | 10,876 |
G | G | T | ||
SNP | rpl23 coding region | 17,433 | 17,429 | 17,431 |
C | A | A | ||
SNP | trnP-trnW spacer | 21,020 | 21,017 | 21,018 |
A | G | A | ||
SNP | psbJ-clpP spacer | 23,914 | 23,912 | 23,912 |
G | T | G | ||
SNP | accD-rbcL spacer | 28,328 | 28,350 | 28,349 |
C | G | G | ||
SNP | ndhJ-chlN spacer | 37,074 | 37,095 | 37,094 |
G | C | C | ||
SNP | chlB cording region | 47,179 | 47,200 | 47,219 |
T | G | G | ||
SNP | rps2 cording region | 76,758 | 76,778 | 76,797 |
C | A | A | ||
SNP | atpI-atpH spacer | 78,483 | 78,503 | 78,522 |
T | C | C | ||
SNP | atpF intron | 79,981 | 80,001 | 80,022 |
G | A | A | ||
SNP | ycf68-rps12 spacer | 105,819 | 105,814 | 105,857 |
T | G | T | ||
SNP | ycf68-rps12 spacer | 105,820 | 105,815 | 105,858 |
C | A | C | ||
SNP | ycf2-ycf1 spacer | 121,669 | 121,634 | 121,743 |
A | A | G | ||
SNP | trnP coding region | 129,690 | 129,647 | 129,704 |
G | A | A | ||
SNP | ccsA-petA spacer | 131,585 | 131,542 | 131,579 |
T | T | G |
Indels | |||||
1 | 2 | 3 | 4 | 5 | |
Draft SQ position | 25,582 | 43,925 | 115,841 | 128,720 | 130,019 |
Region | clpP-aacD spacer | matK | ycf2 | ycf1 | trnL-UAG-ccsA spacer |
Draft SQ | - | - | - | - | - |
Yaku-sugi | 24 bp insertion | - | 33 bp deletion | - | - |
Wogon-sugi | 24 bp insertion | 19 bp insertion | 33 bp insertion | 66 bp deletion | 19 bp deletion |